DFT optimized structure of ADE(s):ADE(s) Cis basepair


Intra-basepair Parameters

Buckle(°)-64.98
Open angle(°)-27.96
Propeller (°)-24.01
Stagger (Å)-0.71
Shear (Å)-2.42
Stretch (Å)3.44

Basepair Geometry

C1'-C1' Distance(Å)5.74
C6-C8 Distance (Å)8.92
Opening (°)96.64
Glycosidic angle- 1(°)121.62
Glycosidic angle- 2(°)113.40

Quantum Chemical interaction energy = -10.19 Kcal/mol

(Ref: Unpublished data)

Intra-basepair parameters and basepair geometry are calculated by NUPARM.