DFT optimized structure of ADE(h):ADE(s) Trans basepair


Intra-basepair Parameters

Buckle(°)4.32
Open angle(°)-1.05
Propeller (°)18.61
Stagger (Å)-0.44
Shear (Å)2.29
Stretch (Å)2.92

Basepair Geometry

C1'-C1' Distance(Å)9.53
C6-C8 Distance (Å)8.42
Opening (°)37.24
Glycosidic angle- 1 (°)5.38
Glycosidic angle- 2 (°)89.27

Quantum Chemical interaction energy = -4.01 Kcal/mol

(Ref: Panigrahi et.al ,J. Biomol. Struc. Dyn.,2011, 3)

Intra-basepair parameters and basepair geometry are calculated by NUPARM.