DFT optimized structure of model ADE(h):ADE(h) Cis basepair


Intra-basepair Parameters

Buckle(°)-10.51
Open angle(°)17.6
Propeller (°)-12.22
Stagger (Å)0.03
Shear (Å)2.77
Stretch (Å)2.52

Basepair Geometry

C1'-C1' Distance(Å)8.12
C6-C8 Distance (Å)4.34
Opening (°)115.59
Glycosidic angle- 1 (°)77.46
Glycosidic angle- 2 (°)37.01

Quantum Chemical interaction energy = -5.75 Kcal/mol

(Ref: Panigrahi et. al, Unpublished data)

Intra-basepair parameters and basepair geometry are calculated by NUPARM.