DFT optimized structure of ADE(W):ADE(W) Trans basepair


Intra-basepair Parameters

Buckle (°)4.40
Open angle(°)0.00
Propeller (°)-12.06
Stagger (Å)0.00
Shear (Å)2.27
Stretch (Å)2.98

Basepair Geometry

C1'-C1' Distance(Å)13.71
C6-C8 Distance(Å)11.36
Opening (°)179.98
Glycosidic angle- 1(°)27.74
Glycosidic angle- 2(°)27.75

Quantum Chemical interaction energy = -12.10 Kcal/mol

(Ref: Roy et.al. J.Phy.Chem.B, 2008, 112, 3786))

Intra-basepair parameters and basepair geometry are calculated by NUPARM.