Protein Structure Prediction & Analysis

 Software for analysis of PDB entries

Ligand-Protein Contacts & Contacts of Structural Units

WWW-based Tutorials for Protein Structure

Principles of Protein structure Birkbek College,London

Tutorial on Peptide and Protein Structure   (The University of Georgia

Principles of Protein Structure....etc. (ch. 1 to 5)  (ExPASy server)

Homology modelling for beginners.

---

Secondary structure prediction

PredictProtein

PSIPRED

JPRED

DSC

ZPRED

nnPredict

PSA

SSP

SOPM

SOPMA

Protein Structure 2 / 3D Structure Prediction & Databases at CMS

---

Tertiary structure prediction

Fold recognition (Threading) methods and links

Expasy

MODELLER

---

3D structural similarites (databases & Search tools)

SCOP

Pfam

CATH

FSSP

3Dee

HOMSTRAD

VAST