Basepairs involving Hoogsteen(H) edge of Uracil and Hoogsteen(H) edge of Uracil is shown. Highlighted examples are found from RNA crystal structures obtained from PDB.

Base pairs stabilized by C-H...N/O interactions along with N-H...N/O hydrogen bonds

Basepair

(type & Orientation)

*Frequency

Example

Hydrogen bonding atoms with their precursors

U:U h:h Trans

0

Optimized Model Structure

N3-O4...C5-N1

N1-C5...O4-N3

* 1st and 2nd numbers in Frequency column represent the numbers of occurences as base pairs and as base triplets, respectively.