DFT optimized structure of model CYT(W):CYT(W) Trans basepair


Intra-basepair Parameters

Buckle(°)-0.03
Open angle(°)0.01
Propeller (°)0.02
Stagger (Å)0.01
Shear (Å)2.07
Stretch (Å)2.91

Basepair Geometry

C1'-C1' Distance(Å)10.98
C6-C8 Distance (Å)8.67
Opening (°)180.0
Glycosidic angle- 1 (°)21.27
Glycosidic angle- 2 (°)21.27

Quantum Chemical interaction energy = -16.78 Kcal/mol

(Ref: Panigrahi et. al., Unpublished data)

Intra-basepair parameters and basepair geometry are calculated by NUPARM.