List of Publication



  1. S. Maiti, D. Bhattacharyya (2017) Stacking Interactions Involving non-Watson-Crick Basepairs: Dispersion Corrected Density Functional Theory Studies. Phys. Chem. Chem. Phys. 19: 28718-28730.

  2. A. Ray, A. Agarwal, D. Bhattacharyya (2017) Effect of Single-Residue Bulges on RNA Double-helical Structures: Crystallographic Database Analysis and Molecular Dynamics Simulation Studies. J. Mol. Model.23: 311

  3. D. Mukherjee and D. Bhattacharyya(2017) Intrinsic Structural Variability in GNRA like Tetraloops: Insight from Molecular Dynamics Simulation. J. Mol. Model. 23: 300

  4. A. Gupta, S. Mukherjee, A. Dutta, J. Mukhopadhyay, D. Bhattacharyya, S. Mandal (2017) Identification of Suitable Promoter for Sigma Factor of Mycobacterium tuberculosis. Mol. Biosystem 13: 2370-2378.

  5. S. Ghosh, S. Mukherjee, C. Dutta, K. Chakraborty, P. Gayen, S. Jan, D. Bhattacharyya, R. SinhaRoy (2017) Engineered isopeptide bond stabilized fibrin inspired nanoscale peptide based sealants for efficient blood clotting. Sci. Rep. DOI:10.1038/s41598-017-06360-3

  6. S. Kundu, S. Mukherjee, D. Bhattacharyya (2017) Melting of Polymeric DNA Double Helix at Elevated Temperature: A Molecular Dynamics Approach. J. Mol. Model. 23: 226.

  7. A. Halder, R. Roy, D. Bhattacharyya, A. Mitra (2017) How does Mg2+ Modulate the RNA Folding Mechanism: A Case Study of the G:C W:W Trans Basepair. Biophys. J 113: 1-13.

  8. A. Mazumder, S. Batabyal, M. Mondal, T. Mondol, S. Choudhury, R. Ghosh, T. Chatterjee, D. Bhattacharyya, S. K. Pal, S. Roy (2017) Specific DNA Sequences Allosterically Enhance Protein-Protein Interaction in a Transcription Factor through Modulation of Protein Dynamics: Implications for Specificity of Gene Regulation. Phys. Chem. Chem. Phys., 19: 14781-14792.

  9. D. Bhattacharyya, S. Halder, S. Basu, D. Mukherjee, P. Kumar, M. Bansal (2017) RNAHelix: Computational Modeling of Nucleic Acid Structures with Watson-Crick and Non-canonical Base Pairs. J. Comp. Aided. Mol Des. 31: 219-235.

  10. G. Naiya, P. Raha, M. Mondal, U. Pal, R. Saha, S. Chaudhuri, S. Batabyal, S.K. Pal, D. Bhattacharyya, N.C. Maiti, S. Roy (2016) Conformational Selection Underpins Recognition of Multiple DNA sequences by Proteins and Consequent Functional Actions. Phys.Chem.Chem.Phys. 18: 21618-21628

  11. D. Dey, M.K. Sarangi, A. Ray, D. Bhattacharyya, D.K. Maity (2016) Excited State Hydrogen Bonding Fluorescent Probe: Role of Structure and Environment. J. Luminescence 173:105-112

  12. M. Mondal, S. Halder, J. Chakrabarti, D. Bhattacharyya (2016) Hybrid simulation approach incorporating microscopic interactions along with rigid body degrees of freedom for stacking between base pairs. Biopolymers 105: 212-226

  13. B. Koley Seth, A. Ray, M. Banerjee, T. Bhattacharyya, D. Bhattacharyya, S. Basu (2015) Structure dependent hydrophobic and hydrophilic interactions between nickel(II) Schiff base complexes and serum albumins: spectroscopic and docking studies. J. Luminescence171: 85-97.

  14. P. Payghan, D. Bhattacharyya, N. Ghoshal (2015) Capturing state dependent dynamic events of GABAA-receptors: A microscopic look into the structural and functional insights. J. Biomol. Struct. Dynam. 28: 695-706.

  15. S. Roy, S. Basu, D. Dasgupta, D. Bhattacharyya, R. Banerjee (2015) Application of Network Based Metrics to Probe Patterns in The Unlocking of Close Packing During The Unfolding of Cyclophilin. PloS One 10(11):E0142173.

  16. A. Ray, S. Panigrahi, D. Bhattacharyya (2015) A comparison of four different conformations adopted by human telomeric G-quadruplex using computer simulations. Biopolymers 105, 83-99

  17. A. Halder, S. Bhattacharya, A. Datta, D. Bhattacharyya, A. Mitra (2015) Role of N7 protonation of guanine in determining structure, stability and function of RNA base pairs. Phys. Chem. Chem. Phys. 17 26249-26263.

  18. U.K. Basak, A. Datta, D. Bhattacharyya (2015) Stability and softening of a lipid monolayer in the presence of a pain-killer drug. Colloids and Surfaces B: Biointerfaces. 132 34-44.

  19. M. Mondal, S. Mukherjee, D. Bhattacharyya (2015) Stacking geometry for non-canonical G:U wobble base pair containing dinucleotide sequences in RNA: Dispersion-corrected DFT-D stydy. Biopolymers 103 328-338.

  20. S. Bhattacharya, S. Mittal, S. Panigrahi, P. Sharma, S.P. Preethi, R. Paul, S. Halder, A. Halder, D. Bhattacharyya, A. Mitra (2015) RNABP COGEST: A resource for investigating functional RNAs. Database (Oxford) DOI:10.1093/database

  21. A. Poddar, R.T. Lepcha, D. Mukherjee, D. Bhattacharyya, S.K. Das (2014) Comparative analysis of 16S rRNA signature sequences of genus idiomarina and idiomarina woesei sp. nov., a novel marine bacterium isolated from the Andaman sea. Res. Microbiol. 165 501-507.

  22. A. Ray, K. Bagani, S. Banerjee, D. Bhattacharyya (2014) Oxidative tearing of graphene sheets: Insights into the probable situations by computational and experinental studies. J. Phys. Chem. C. 119 951-959.

  23. A. Halder, S. Halder, D. Bhattacharyya, A. Mitra (2014) Feasibility of Occurrence of different Types of Protonated Base Pairs in RNA: A Quantum Chemical Study. Phys. Chem. Chem. Phys. 16: 18383-18396.

  24. M. Mondal, D.Choudhury, J. Chakrabarti, D. Bhattacharyya (2014) Role of indirect readout mechanism in TATA box binding protein-DNA interaction. J. Comp. Aided Mol. Des. 29: 283-295.DOI 10.1007/s10822-014-9828

  25. M. Mondal, S. Mukherjee, D. Bhattacharyya (2014) Contribution of phenylalanine side chain interaction to the TATA-box binding protein-DNA interactions: Molecular dynamics and dispersion-corrected density functional theory studies. J. Mol. Model. DOI 10.1007/s00894-014-2499-7

  26. S. Mukherjee, S. Kailasam, M. Bansal, D. Bhattacharyya (2014) Stacking interactions in RNA and DNA: Roll-slide energy hyperspace for ten unique dinucleotide steps. Biopolymers 103: 134-147.

  27. S. Mukherjee, S. Kundu, D. Bhattacharyya (2014) Temperature Effect on poly(dA).poly(dT): Molecular dynamics simulation studies of polymeric and oligomeric constructs. J. Comput. Aided Mol. Des. DOI 10.1007/s10822-014-9755-x 28: 735-749.

  28. P.K. Pingali, S. Halder, D. Mukherjee, S. Basu, R. Banerjee, D. Choudhury and D. Bhattacharyya(2014) Analysis of stacking overlap in nucleic acid structures: Algorithm and application. J. Comp. Aided Mol. Des 28: 851-867.

  29. A. Halder, A. Datta, D. Bhattacharyya, A. Mitra (2014) Why does substitution of thymine by 6-ethynylpyridone increase the thermostability of DNA double helix? J. Phys. Chem.118: 6586-6596.

  30. S. Roy, S. Basu, A.K. Datta, D. Bhattacharyya, D. Dasgupta, R. Banerjee (2014) Equilibrium unfolding of cyclophilin from Leishmania donavani: Characterization of intermediate states. Int. J. Biol. Macromol. 69, 353-360.

  31. M. Bera, H.C. Kotamarthi, S. Dutta, A. Ray, S. Ghosh, D. Bhattacharyya, S.R.K. Ainavarapy, K. Sengupta (2014) Biochemistry 53, 7247-7258.

  32. S. Basu, D. Bhattacharyya (2013) polDNAmelt: Local Melting Within Polymeric DNA – An Improved Method and its Applications. J. Bioinfo. Intell. Control 2, 316-320

  33. S. Basu, D. Bhattacharyya, R. Baerjee (2013) SARAMA: A Standalone Suite of Programs for the Complementary Plot – A Graphical Structure Validation Tool for Proteins. J. Bioinfo. Intell. Control 2 321-323.

  34. S. Kailasam, D. Bhattacharyya, M. Bansal (2014)Sequence dependent variations in RNA duplex are related to non-canonical hydrogen bond interactions in dinucleotide steps. BMC Research Notes. doi:10.1186/1756-0500-7-83

  35. S. Halder, D. Bhattacharyya (2013) RNA structure and dynamics: A base pairing perspective. Prog. Biophys. Mol. Biol. 113, 264-283.

  36. S. Mukherjee, S. Kailasam, M. Bansal, D. Bhattacharyya (2013) Energy Hyperspace for Stacking Interaction in AU/AU Dinucleotide Step: Dispersion Corrected Density Functional Theory Study. Biopolymers 101, 107-120.

  37. R. Pal, S. Panigrahi, D. Bhattacharyya and A.S. Chakraborti (2013) Characterization of citrate capped gold nanoparticle-quercetin complex: experimental and quantum chemical approach. J. Mol. Struct. 1046: 153-163.

  38. P. Mitra, B. Chakraborty, D. Bhattacharyya and S. Basu (2013) Excimer of 9-Aminoacridine Hydrochloride Hydrate in Confined Medium: An Integrated Experimental and Theoretical Study. J. Phys. Chem. A. 117, 1428-1438.

  39. R.S.K. Vijayan, N. Trivedi, S.N. Roy, I. Bera, P. Manoharan, P.V. Payghan, D. Bhattacharyya and N. Ghoshal (2012) Modeling the Closed and Open State Conformation of the GABAA Ion Channel -- Plausible Structural Insights for Channel Gating. J. Chem. Info. Model. 52, 2958-2969.

  40. S. Halder and D. Bhattacharyya (2012) Structural Variations of Single and Tandem Mismatches in RNA Duplexes: A Joing MD Simulation and Crystal Structure Database Analysis. J. Phys. Chem. B 116, 11845-11856

  41. S. Mukherjee and D. Bhattacharyya (2012) Influence of divalent magnesium ion on DNA: molecular dynamics simulation studies. J. Biomol. Struct. Dynam. 31, 896-912.

  42. S. Basu, D. Bhattacharyya and R. Banerjee (2012) Self-Complementarity within Proteins: Bridging the Gap between Binding and Folding. Biophys. J. 102, 2605-2614.

  43. S. Kundu, S. Mukherjee and D. Bhattacharyya(2012) Effect of temperature on DNA double helix: An insight from molecular dynamics simulation. J. Biosci 37, 445-455.

  44. S.S. Ray, S. Halder, S. Kaypee and D. Bhattacharyya (2012) HD-RNAS: an automated hierarchical database of RNA structures. Frontiers in Genetics 3, 59

  45. S. Panigrahi, A. Bhattacharya, S. Banerjee, D. Bhattacharyya (2012) Interaction of Nucleobases with Wrinkled Graphene Surface: Dispersion Corrected DFT and AFM Studies. J. Phys. Chem. C 116, 4374-4379

  46. M.K. Sarangi, D. Bhattacharyya, S. Basu (2012) Influence of 2'-Deoxy Sugar Moiety on Excited-State Protonation Equilibrium of Adenine and Adenosine with Acriding inside SDS Micelles: A Time-resolved Study with Quantum Chemical Calculations. ChemPhysChem. 13 525-534.

  47. M. Santosh, S. Panigrahi, D. Bhattacharyya, A.K. Sood, P. Maiti (2012) Unzipping and Binding of siRNA with Single Walled Carbon Nanotube: A Platform For siRNA Delivery. J. Chem. Phys.137, 054903.

  48. S. Panigrahi, A. Bhattacharya, D. Bandyopadhyay, S. J. Grabowski, D. Bhattacharyya, S. Banerjee (2011) Wetting Property of the Edges of Monoatomic Step on Graphite: Frictional-Force Microscopy and ab Initio Quantum Chemical Studies. J. Phys. Chem. C115,14819-14826.

  49. M. Santosh, S. Panigrahi, D. Bhattacharyya, A.K. Sood and P.K. Maiti (2012) Unzipping and Binding of Small Interfering RNA with Single Walled Carbon Nanotube: A Platform for Small Interefering RNA Delivery. J. Chem. Phys. 136, 065106.

  50. S. Panigrahi, R. Pal, D. Bhattacharyya (2011) Structure and Energy of Non-Canonical Base Pairs: Comparison of Various Computational Chemistry Methods with Crystallographic Ensembles. J. Biomol. Struct. Dynam. 29, 541-556.

  51. S. Basu, D. Bhattacharyya and R. Banerjee (2011) Mapping the distribution of packing topologies within protein interiors shows predominant preference for specific packing motifs., BMC Bioinformatics 12, 195.

  52. R.S.K. Vijayan, D. Bhattacharyya and N. Ghoshal (2011) Deciphering the binding mode of Zolpidem to GABAA α1 receptor – insights from molecular dynamics simulation, J. Mol. Model 18: 1345-1356.

  53. M. Chawla, P. Sharma, S. Halder, D. Bhattacharyya and A. Mitra (2011) Protomation of base pairs in RNA: Context Analysis and Quantum Chemical Investigations of their Geometries and Stabilities, J. Phys, Chem. B 115: 1469-1484

  54. S. Halder and D. Bhattacharyya(2010) Structural Stability of Tandemly Occurring Noncanonical Basepairs within Double Helical Fragments: Molecular Dynamics Studies of Functional RNA. J. Phys. Chem. B 114: 14028-14040.

  55. P. Sharma, J. Sponerova, J. Sponer, S. Sharma, D. Bhattacharyya and A. Mitra (2010) On the Role of cis Hoogsteen:Sugar Edge Family of Base Pairs in Platforms and Triplets – Quantum Chemical Insights into RNA Structural Biology. J. Phys. Chem. B 114: 3307-3320.

  56. N. M. Mascarenhas, D. Bhattacharyya and N. Ghoshal (2010) Why Pyridine Containing Pyrido[2,3-d]pyrimidin-7-ones Selectively Inhibit CDK4 Than CDK2: Insights From Molecular Dynamics Simulation. J. Molec. Graphics Modelling 28: 695-706.

  57. A. Borkar, I. Ghosh and D. Bhattacharyya (2010) Structure and Dynamics of Double Helical DNA in Torsion Angle Hyperspace: A Molecular Mechanics Approach. J. Biomol. Struct. Dynam 27:695-712

  58. S. Samanta, J. Chakrabarti and D. Bhattacharyya (2010) Changes in Thermodynamic Properties of DNA Base Pairs in Protein-DNA Recognition. J. Biomol. Struct. Dynam. 27: 429-442

  59. V. Venugopal, A.K. Datta, D. Bhattacharyya, D. Dasgupta and R. Banerjee (2009)Structure of cyclophilin from Leishmania donovani bound to cyclosporin at 2.6 A resolution: correlation between structure and thermodynamic data. Acta Cryst. D 65: 1187-1195

  60. S. Samanta, S. Mukherjee, J. Chakrabarti, and D. Bhattacharyya (2009) Structural properties of polymeric DNA from molecular dynamics simulations. J. Chem. Phys 130:115103.

  61. A. Mladek, P. Sharma, A. Mitra, D. Bhattacharyya, J. Sponer and J.E. Sponer (2008) The Trans Hoogsteen/Sugar Edge Base Pairing in RNA. Structures, Energies and Stabilities from Quantum Chemical Calculations. J. Phys. Chem. B 113:1743-1755 .

  62. J. Basu, D. Bhattacharyya and B. Sarkar (2008) Overall Cluster Effectiveness Index: An Instrument for Assessment of Development Programs for Industrial Clusters in Developing Countries., Sedme journal 35: 70-94

  63. P. Sharma, A. Mitra, S. Sarma, H. Singh, D. Bhattacharyya (2008) Quantum Chemical Studies of Structures and Binding in Noncanonical RNA Base Pairs: The Trans Watson-Crick:Watson-Crick Family. J. Biomol. Struct. Dynam. 25, 709-732.

  64. T. Sarkar, S. Roy, J. Bhattacharya, D. Bhattacharya, C.K. Mitra and A.K. Dasgupta (2008) Thermal Histerisis of some important physical properties of Nanoparticles, J. Colloid Interfac Sci. 327: 224-232

  65. S. Samanta, M. Kabir, B. Sanyal and D. Bhattacharyya (2008) Twist-Dependent Stacking Energy of Base-Pair Steps in B-DNA Geometry: A Density Functional Theory Approach, Int. J. Quant. Chem. 108: 1173-1180

  66. P. Sharma, A. Mitra, S. Sharma, H. Singh and D. Bhattacharyya (2008) Quantum Chemical Studies of Structures and binding in Noncanonical RNA Base pairs: The Trans Watson Crick/WatsonCrick family. J. Biomol. Struct. Dynam. 25: 709-732.

  67. A. Roy, S. Panigrahi, M. Bhattacharyya, and D. Bhattacharyya (2008) Structure, Stability, and Dynamics of Canonical and Noncanonical Base Pairs: Quantum Chemical Studies, J. Phys. Chem. B 112: 3786-3796

  68. S. Banerjee and D. Bhattacharyya (2008) Electronic properties of nano-graphene sheets calculated using quantum chemical DFT, Comput. Mater. Sci.doi: 10.1016/j.commatsci.2008.01.044

  69. D. Dey, A. Basu, D. Bhattacharyya, S. Basu, S.S. Maity and S. Ghosh (2007) Dibenzo[a,c]phenazine: A Polarity Insensitive Hydrogen Bonding Probe, J. Phys. Chem. A111, 10500-10506.

  70. D. Bhattacharyya, S.C. Koripella, A. Mitra, V.B. Rajendran and B. Sinha (2007) Theoretical Analysis of Noncanonical Base Pairing Interactions in RNA Molecules, J. Biosci. 32, 809-25.

  71. The NMITLI-BioSuite Team (2007) BioSuite: A comprehensive bioinformatics software package (A unique industry academia collaboration), Current Science, 92, 29-38.

  72. S. Mukherjee, M. Bansal and D. Bhattacharyya (2006) Conformational specificity of non-canonical base pairs 4 and higher order structures in nucleic acids: crystal 5 structure database analysis, J. Comp. Aided Mol. Des. 20, 629-45.

  73. J. Das, S. Mukherjee, A. Mitra and D. Bhattacharyya (2006) Non-Canonical Base Pairs and Higher Order Structures in Nucleic Acids: Crystal Structure Database Analysis J. Biomol. Struct. Dynam. 24, 149-161.

  74. D. Bandyopadhyay and D. Bhattacharyya (2006) Estimation of Strength in different Extra Watson-Crick Hydrogen Bonds in DNA Double Helices through Quantum Chemical studies, Biopolymers 83, 313-325.

  75. K. Sen, S. Basu and D. Bhattacharyya (2006) Ab Initio Studies on Excited State Intramolecular Electron Transfer in 4-Amino-/N/-Methylphthalimide and 3- Amino-/N/-Methylphthalimide Int. J. Quantum Chem. 106, 913-927.

  76. M.C. Blaise, D. Bhattacharyya, R. Sowdhamini and N. Pradan (2005) Structural consequences of D481N/K483Q mutation at glycine binding site of NMDA ionotropic glutamate receptors: a molecular dynamics study. J Biomol Struct Dynam. 22, 399-410.

  77. D. Bhattacharyya, K. Sen and S. Mukherjee (2005) Non-planar Amino Groups: Protein Structure Database Analysis and Ab Initio Quantum Chemical Studies on Model Systems Ind. J. Chem. A (Special Issue on Chemoinformatics and Computer Aided Drug Design) 45A, 58-67.

  78. S. Mukherjee, S. Majumdar and D. Bhattacharyya (2005) Role of Hydrogen Bonds in Protein-DNA Recognition: Effect of Non-planar Amino Groups, J. Phys. Chem. B 109, 10484-10492.

  79. S. Basu, R. Majumdar, G.K. Das and D. Bhattacharyya (2005) Energy Barriers and Rates of Tautomeric Transitions in DNA Bases: Ab initio Quantum Chemical Study Ind. J. Biochem. Biophys. 42, 378-385.

  80. S. Mukherjee and D. Bhattacharyya (2004) Effect of Phosphorothioate Chirality on the Grooves of DNA Double Helices: A Molecular Dynamics Study Biopolymers 73, 269-82.

  81. A.K. Dasgupta, R. Majumdar and D. Bhattacharyya (2004) Characterization of non-planar peptide groups in protein crystal structures Ind. J. Biochem. Biophys. 42, 49-55.

  82. K. Sen, S. Basu and D. Bhattacharyya (2004) QM/MM study of excited state electron transfer between pyrene and 4,4-Bis (dimethylamino)diphenylmethane with different solvent systems: role of hydrogen bonding within solvent molecules Inter. J. Quantum Chemistry 102, 368-378.

  83. S. K. Maji, D. Haldar, D. Bhattacharyya, A. Banerjee (2003) Conformational heterogeneity of a turn mimetic pseudo-peptide: comparison of crystal state, solution and theoretically derived structures J. Mol. Struct. 646, 111-123.

  84. D. Bandyopadhyay and D. Bhattacharyya (2003) Different Modes of Interaction between hydrated magnesium ion and DNA functional groups: Database analysis and ab initio studies J. Biomol. Struct. Dynam. 21, 447-458.

  85. R. Banerjee, M. Sen, D. Bhattacharya and P. Saha (2003) The Jigsaw Puzzle Model: Search for Conformational Specificity in Protein Interiors J. Mol. Biol. 333, 211-226.

  86. D. Bandyopadhyay and D. Bhattacharyya (2002) Effect of flanking residues on CA and AA dinucleotides: Some rationale J. Biomol. Struct. Dynam. 19, 659-667.

  87. S. Kundu, D. Bhattacharyya, R. Majumdar and A.R. Thakur (2001) Nucleosomal positioning and genetic divergence study based on DNA flexibility map J. Biomol. Struct. Dynam. 18, 527-533.

  88. K. Sen, S. Bandyopadhyay, D. Bhattacharyya and S. Basu (2001) Dielectric dependence of magnetic field effect: A tool for identification of exciplex and triplex J. Phys. Chem. 105, 9077-9084.

  89. S. Chakrabarti, D. Bhattacharyya, D. Dasgupta (2001) Structural basis of DNA recognition by anticancer antibiotics, chromomycin A(3), and mithramycin: roles of minor groove width and ligand flexibility. Biopolymers 56, 85-95.

  90. D. Bhattacharyya and R. Majumdar (2001) Structural basis of DNA flexibility Ind. J. Biochem. Biophys.37, 16-19.

  91. D. Bhattacharyya, G.K. Das and D.P. Burma (2001) Peptidyl transferase activity of RNA: A quantum chemical study Ind. J. Biochem. Biophys. 38, 48-52.

  92. Chakrabarti, D. Dasgupta and D. Bhattacharyya (2000) Role of Mg2+ in chromomycin A3-DNA interaction: A molecular modeling study J. Biol. Phys. 26, 203- 218.

  93. S. Chakrabarti, P. Aich, D. Sarker, D. Bhattacharyya, D. Dasgupta (2000) Role of Mg2+ in the interaction of anticancer antibiotic, chromomycin A3 with DNA: does neutral antibiotic bind DNA in absence of the metal ion? J Biomol. Struct. Dynam. 18, 209-218.

  94. Bandyopadhyay and D. Bhattacharyya (2000) Effect of neighboring residues in base-pair doublet geometry: A molecular dynamics study J. Biomol. Struct. Dynam. 18, 29-43.

  95. D. Bhattacharyya, S. Kundu, A.R. Thakur and R. Majumdar (1999) Sequence Directed Flexibility of DNA and the Role of Cross-strand Hydrogen Bonds J. Biomol. Struct. Dynam. 17, 289-300.

  96. K. Das, D. Bhattacharyya and D.P. Burma (1999) A Possible Mechanism of Peptide Bond Formation on Ribosome without Mediation of Peptidyl Transferase J. Theor. Biol. 200, 193-205.

  97. Banerjee, S. Ray and D. Bhattacharyya (1999) Surface Complementarity of Buried Protein Residues Current Science 78, 258-267.

  98. Majee, R. Sen, S. Guha, D. Bhattacharyya and D. Dasgupta (1997) Differential Interactions of the Mg2+ Complexes of Chromomycin A3 and Mithramycin with Poly(dG-dC).poly(dC-dG) and Poly(dG).Poly(dC) Biochemistry 36, 2291-2299.

  99. Bhattacharyya, B.R. Brooks and L. Callahan (1996) Positioning of Positively Charged Residues in the V3 Loop of HIV-1 GP120 Correlates with Syncytium Inducing Phenotype AIDS Res. Hum. Retrov. 12, 83-90.

  100. Bansal, D. Bhattacharyya and B. Ravi (1995) NUPARM and NUCGEN: Software for Analysis and Generation of Sequence Dependent Nucleic Acid Structures CABIOS 11, 281-287.

  101. Bansal, D. Bhattacharyya and S. Vijaylaksmi (1995) NUVIEW: Software for Display and Interactive Manipulation of Nucleic Acid Models CABIOS 11, 289-292.

  102. K. Nagaich, D. Bhattacharyya, S.K. Brahmachari and M. Bansal (1994) CA/TG Sequence at the 5'-end of Oligo A-Tracts Strongly Modulates DNA Curvature J. Biol. Chem. 269, 7824-7833.

  103. Bhattacharyya and M. Bansal (1994) Analysis of Base Sequence Dependent Variability in Secondary and Tertiary Structure of tRNA Molecules J. Biomol. Struct. Dynam. 11, 1251-1275.

  104. Bhattacharyya and M. Bansal (1992) Groove Width and Depths of B-DNA Structures Depend on Local Variation is Slide J. Biomol. Struct. Dynam.10, 213-226.

  105. Bansal, D. Bhattacharyya and D. Mohanty (1991) DNA Bending: A Natural Consequence of Base Sequence Dependent Variability in Biopolymer Conformations (Eds. S. Ramashesan and P. Balaram) pp 347-362.

  106. Bhattacharyya and M. Bansal) (1990) Local Variability and Base Sequence Effects in DNA Crystal Structures J. Biomol. Struct. Dynam. 8, 539-572.

  107. Bhattacharyya and M. Bansal (1989) A Self-Consistent Formulation for Analysis and Generation of Nun-Uniform DNA Structures J. Biomol. Struct. Dynam. 6, 645-653.

  108. Bansal and D. Bhattacharyya (1989) Real and Apparent Curvature in Oligonucleotides in Structure & Methods, vol. 3 (Eds. R.H. Sarma and M.H. Sarma) pp. 139-153.

  109. Bhattacharyya and M. Bansal (1988) A General Procedure for Generation of Curved DNA Molecules J. Biomol. Struct. Dynam. 6, 93-104.

  110. Bhattacharyya and M. Bansal) (1988) Why do DNA Helical Models Exhibit Wedge Rolls? A Mathematical Rationale Current Science 57, 1159-1162.

  111. Bhattacharyya and M.Bansal (1987) Energetics of Left and Right Handed Models of DNA J. Biomol. Struct. Dynam. 4, 1027-1040.




Software Publication :


1. M. Bansal and _D. Bhattacharyya_ (1990) NUPARM - A Nucleic Acid

Parameter Determination Program, /distributed by Brookhaven Protein Data

Bank (ftp://ftp.rcsb.org/pub/pdb/software/bnl_software/nuparm) as

Program entry./